- BrennerMD is a public domain Fortran moleculardynamics program by Donald Brenner and other people. This project is to maintain the original source code and to build a Python interface on top of. ..
- brennerc-in-fungimol-0.5.0.tar.gz
- brennermd
- Freeware (Free)
- 255 Kb
- BSD; Linux
- Mdxvu is a C code program for Linux, Un*x and Win32/Cygwin. It analyses molecular structures and moleculardynamics (MD) trajectories from the AMBER, GROMACS, TINKER and DISCOVER (TM) programs. Simple graphics are provided by using the X11/XLIB. ..
- mdxvu_april2008_v2.tar.gz
- mdxvu
- Freeware (Free)
- 2.85 Mb
- N/A
- PFMD performs a MolecularDynamics simulation of some polarizable fluids at the liquid state by means of a dissociable potential. Supported molecules are H2O (water) and MX3, where M is a metal among Al, Fe, or Ga and X is a halogen among Cl, Br, or. ..
- pfmd-1.0RC2.tar.gz
- pfmd
- Freeware (Free)
- 348 Kb
- Windows; Mac; Linux
- ProtoMol is an object-oriented component based framework for moleculardynamics ProtoMol is an object-oriented component based framework for molecular dynamics simulations.
- ProtoMol-3.3.0-Windows-32bit.zip
- protomol
- Freeware (Free)
- 12.59 Mb
- Windows; BSD; Solaris; Linux
- Fumody, is a program for work with XYZ file types, have two principal lines for xyz file types, one is for more general XYZ file options as a utility for rescaled, center, informations, etc. and other line more specifically for analysis configurations.
- File utilities for moleculardynamics
- Joaquin Peralta
- Freeware (Free)
- Windows
- This project aims at providing a user package for the moleculardynamicssoftware LAMMPS, which allows the complete simulation to run on a GPU. Additional information and svn access to 'bleeding etch' code can be found on the project website. ..
- LAMMPS_CUDA
- code
- Freeware (Free)
- 52.68 Mb
- BSD; Linux
- This project contains a custom version of the GROMACS moleculardynamicssoftware package that helps users to choose parameters for the PME electrostatics model which produce a known error in the PME approximation for minimal computational. ..
- pme-optimization-4.5.4.tar.gz
- pmeopt
- Freeware (Free)
- 14.76 Mb
- Linux
- The Molecular Modeling Templates, MMT is a C++ class library for molecular simulation applications. MMT serves as a code basis that can be easily extended and modified to perform Monte Carlo and moleculardynamics simulations.
- Molecular Modeling Templates
- Masakatsu Ito
- Freeware (Free)
- Windows
- Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or. ..
- Open3DALIGN x64
- Paolo Tosco
- Freeware (Free)
- 5.2 Mb
- WinXP, Windows Vista, Windows 7 x64
- Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or. ..
- Open3DALIGN for Mac OS X
- Paolo Tosco
- Freeware (Free)
- 3.6 Mb
- Mac OS X
- Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or. ..Mar 13, 2019 Some of The Best Medieval Games You’ll Ever Play #24 Arcania: Gothic 4. Your browser does not currently recognize any of the video formats available. #23 Vikings: Wolves of Midgard. Vikings: Wolves of Midgard is an action-RPG. #22 Assassin’s Creed. The first Assassin’s Creed was an incredibly.
- Open3DALIGN
- Paolo Tosco
- Freeware (Free)
- 4.1 Mb
- WinXP, Windows Vista, Windows 7
- Open3DALIGN is an open-source software aimed at unsupervised molecular alignment. Open3DALIGN is a command-line tool which is operated by means of a few commands which can be entered interactively from a command prompt, read from a batch script or. ..
- Open3DALIGN for Linux
- Paolo Tosco
- Freeware (Free)
- 3.3 Mb
- Linux
Molecular Dynamics Software Mac
A few molecular dynamics software packages are available for life science research and simulations. Different software have different features and their own merits. Here is a brief introduction to three of the most popular molecular dynamics packages - Amber, CHARMm and Gromacs - which we have been supporting in recent years. LAMMPS is a classical molecular dynamics code with a focus on materials modeling. It's an acronym for Large-scale Atomic/Molecular Massively Parallel Simulator. LAMMPS has potentials for solid-state materials (metals, semiconductors) and soft matter (biomolecules, polymers) and coarse-grained or mesoscopic systems.
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